Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group - Functional Genomics

Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol Ll, Estivill X, Alba MM. Origin of primate orphan genes: a comparative genomics approach. Mol Biol Evol, 2009, 26: 603-612. PMID: 19064677 . DOI: 10.1093/molbev/msn281.

2009

Original articles in indexed journals - PharmacoInformatics

Bergmann R, Liljefors T, Sorensen MD, Zamora I. SHOP: Receptor-Based Scaffold HOPping by GRID-Based Similarity Searches. J Chem Inf Model 2009; 49(3): 658-669. PMID: 19265417 . DOI: 10.1021.

2009

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Campanella C, Marino-Gammazza A, Mularoni L, Cappello F, Zummo G, Di Felice V. A comparative analysis of the products of GROEL-1 gene from Chlamydia trachomatis serovar D and the HSP60 var1 transcript from Homo sapiens suggests a possible autoimmune response. Int J Immunogenet 2009;36(1):73-78. PMID: 19207939 . DOI: 10.1111.

2009

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Castelo R, Roverato A. Reverse engineering molecular regulatory networks from microarray data with qp-graphs, J Comput Biol, 2009, 16(2):213-227. PMID: 19178140 . DOI: 10.1089.

2009

Original articles in indexed journals - Structural Bioinformatics - Computational Biochemistry

Scheper J, Oliva B, Villa-Freixa J, Thomson TM. Analysis of electrostatic contributions to the selectivity of interactions between RING-finger domains and ubiquitin-conjugating enzymes. Proteins, 2009; 74(1): 92-103. PMID: 18615712 . DOI: 10.1002/prot.22120.

2009

Original articles in indexed journals - PharmacoInformatics

Mairal T, Nieto J, Pinto M, Almeida MR, Gales L, Ballesteros A, Barluenga J, Pérez JJ, Vázquez JT, Centeno NB, Saraiva MJ, Damas AM, Planas A, Arsequell G, Valencia G. Iodine Atoms: A New Molecular Feature for the Design of Potent Transthyretin Fibrillogenesis Inhibitors. PLoS ONE, 2009; 4:e4124.. PMID: 19125186 . DOI: 10.1371.

2009

Original articles in indexed journals - Computational Science

Harvey M, Giupponi G, De Fabritiis G. ACEMD : Accelerating bio-molecular dynamics in the microsecond time-scale. J Chem Theory Comput. 2009, 5, 1632. DOI: 10.1021/ct9000685.

2009

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Hartmann B, Castelo R, Blanchette M, Boue S, Rio DC, Valcarcel J. Global analysis of alternative splicing regulation by insulin and wingless signalling in Drosophila cells. Genome Biology, 10:R11, 2009.. PMID: 19178699 . DOI: 10.1186.

2009

Original articles in indexed journals - Complex Systems

Solé RV. Evolution and self-assembly of protocells. International Journal of Biochemistry and Cell Biology 41, 274-284

2009

Original articles in indexed journals - Complex Systems

Sardanyés J. Ghosts in high dimensional non-linear dynamical systems: the example of the Hypercycle. Chaos, Solitons and Fractals 39(1), 92-100

2009