Original articles in indexed journals - Computational RNA Biology

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Genova AD, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A. The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Res, 2015; 43 (W1): W589-W598. PMID: 25897122 . DOI: 10.1093/nar/gkv350 JUL 1 2015.

2015

Original articles in indexed journals - PharmacoInformatics - GPCR Drug Discovery

Kaczor AA, Guixa-Gonzalez R, Carrio P, Poso A, Dove S, Pastor M, Selent J. Multi-Component Protein - Protein Docking Based Protocol with External Scoring for Modeling Dimers of G Protein-Coupled Receptors. Mol Inf, 2015; 34 (4): 246-255 DOI: 10.1002/minf.201400088.

2015

Original articles in indexed journals - Systems Pharmacology

Rubio-Perez C, Tamborero D, Schroeder MP, Antolin A, Deu-Pons J, Perez-Llamas C, Mestres J, Gonzalez-Perez A, Lopez-Bigas N. In Silico Prescription of Anticancer Drugs to Cohorts of 28 Tumor Types Reveals Targeting Opportunities. Cancer Cell, 2015; 27; 3: 319-321 . PMID: 25759023 . DOI: 10.1016/j.ccell.2015.02.007.

2015

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

Carrio P, Lopez O, Sanz F, Pastor M. eTOXlab, an open source modeling framework for implementing predictive models in production environments. Journal of Cheminformatics, 2015; 7:8. PMID: 25774224 . DOI: 10.1186/s13321-015-0058-6.

2015

Original articles in indexed journals - Structural Bioinformatics

Segura J, Marín-Lopez MA, Jones PF, Oliva B, Fernandez-Fuentes N. VORFFIP-Driven Dock: V-D2OCK, a Fast and Accurate Protein Docking Strategy. PLoS One, 2015; 10(3):e0118107. . PMID: 25763838 . DOI: doi: 10.1371/journal.pone.0118107. eCollection 2015..

2015

Original articles in indexed journals - PharmacoInformatics

Hewitt M, Ellison CM, Cronin MT, Pastor M, Steger-Hartmann T, Munoz-Muriendas J, Pognan F, Madden JC. Ensuring Confidence in Predictions: A Scheme to Assess the Scientific Validity of In Silico Models. Adv Drug Deliver Rev, 2015; 86: 101-111 . PMID: 25794480 . DOI: 10.1016/j.addr.2015.03.005.

2015

Original articles in indexed journals - Computational Science

Stanley N, Esteban S, de Fabritiis G. Progress in studying intrinsically disordered proteins with atomistic simulations. Prog Biophys Mol Bio, 2015; 119 (1): 47-52 . PMID: 25814479 . DOI: 10.1016/j.pbiomolbio.2015.03.003.

2015

Original articles in indexed journals - Structural Bioinformatics

Martinez-Aranda A, Hernandez V, Guney E, Muixi L, Foj R, Baixeras N, Cuadras D, Moreno V, Urruticoechea A, Gil M, Oliva B, Moreno F, Vidal N, Andreu X, Segui MA, Ballester R, Castella E, Sierra A. FN14 expression in breast cancer is a prognostic and predictive biomarker of brain metastasis outcome that can be targeted with immunomodulators. CLIN EXP METASTAS, 2015; 32 (3):238-239

2015

Original articles in indexed journals - Integrative Biomedical Informatics

Bravo A, Piñero J, Queralt-Rosinach N, Rautschka M, Furlong LI*. Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research. BMC Bioinformatics 2015, 16 (1): 55. PMID: 25886734 . DOI: 10.1186/s12859-015-0472-9.

2015

Original articles in indexed journals - Computational Science

Stanley N, De Fabritiis G. High throughput molecular dynamics for drug discovery. In Silico Pharmacol. 2015;3:3 . PMID: 25717426 .

2015