Books - Structural Bioinformatics

Meseguer A, Bota P, Fernández-Fuentes N, Oliva B. Prediction of Protein-Protein Binding Affinities from Unbound Protein Structures. Methods Mol Biol. 2022;2385:335-351. 34888728. DOI: 10.1007/978-1-0716-1767-0_16.

2021

Original articles in indexed journals - PharmacoInformatics

Bringezua F, Gómez-Tamayo JC, Pastor M. Ensemble prediction of mitochondrial toxicity using machine learning technology. Computational Toxicology, 2021; 20 DOI: 10.1016/j.comtox.2021.100189.

2021

Original articles in indexed journals - NeuroGenomics

Li F, Rane RV, Luria V, Xiong Z, Chen J, Li Z, Catullo RA, Griffin PC, Schiffer M, Pearce S, Lee SF, McElroy K, Stocker A, Shirriffs J, Cockerell F, Coppin C, Sgrò CM, Karger A, Cain JW, Weber JA, Santpere G, Kirschner MW, Hoffmann AA, Oakeshott JG, Zhang G. Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation. Mol Ecol Resour, 2021. PMID: 34839580 . DOI: 10.1111/1755-0998.13561.

2021

Original articles in indexed journals - NeuroGenomics

Franjic D, Skarica M et al (including Santpere G). Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells. Neuron, 2021; S0896-6273 (21) 00866-7. PMID: 34798047 . DOI: 10.1016/j.neuron.2021.10.036.

2021

Original articles in indexed journals - Computational RNA Biology

Ruiz de Garibay G, Fernandez-Garcia I, Mazoyer S, Leme de Calais F, Ameri P, Vijayakumar S, Martinez-Ruiz H, Damiola F, Barjhoux L, Thomassen M, Andersen LVB, Herranz C, Mateo F, Palomero L, Espín R, Gómez A, García N, Jimenez D, Bonifaci N, Extremera AI, Castaño J, Raya A, Eyras E, Puente XS, Brunet J, Lázaro C; GEMO; CIMBA, Radice P, Barnes DR, Antoniou AC, Spurdle AB, de la Hoya M, Baralle D, Barcellos-Hoff MH, Pujana MA. Altered regulation of BRCA1 exon 11 splicing is associated with breast cancer risk in carriers of BRCA1 pathogenic variants. Hum Mutat, 2021; 42(11): 1488-1502. PMID: 34420246 . DOI: 10.1002/humu.24276.

2021

Original articles in indexed journals - Integrative Biomedical Informatics

Callegaro G, Kunnen SJ, Trairatphisan P, Grosdidier S, Niemeijer M, den Hollander W, Guney E, Piñero Gonzalez J, Furlong L, Webster YW, Saez-Rodriguez J, Sutherland JJ, Mollon J, Stevens JL, van de Water B. The human hepatocyte TXG-MAPr: gene co-expression network modules to support mechanism-based risk assessment. Arch Toxicol, 2021; 95(12):3745-3775. PMID: 34626214 . DOI: 10.1007/s00204-021-03141-w.

2021

Original articles in indexed journals - NeuroGenomics

Shibata M, Pattabiraman K, Lorente-Galdos B, Andrijevic D, Kim SK, Kaur N, Muchnik SK, Xing X, Santpere G, Sousa AMM, Sestan N. Regulation of prefrontal patterning and connectivity by retinoic acid. Nature, 2021; 598: 483-488. PMID: 34599305 . DOI: 10.1038/s41586-021-03953-x.

2021

Original articles in indexed journals - Structural Bioinformatics

Farré X, Molina R, Barteri F, Timmers PRHJ, Joshi PK, Oliva B, Acosta S, Esteve-Altava B, Navarro A, Muntané G. Comparative Analysis of Mammal Genomes Unveils Key Genomic Variability for Human Life Span. Mol Biol Evol, 2021; 38(11): 4948-4961. PMID: 34297086 . DOI: 10.1093/molbev/msab219.

2021

Original articles in indexed journals - Integrative Biomedical Informatics - Computational RNA Biology

Trincado JL, Reixachs-Solé M, Perez-Granado J, Fugmann T, Sanz F, Yokota J, Eyras E. ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer. PLOS Comput Biol, 2021; 17(9): e1009411 DOI: 10.1371/journal.pcbi.1009411.

2021

Original articles in indexed journals - NeuroGenomics

de Martin X, Sodaei R, Santpere G. Mechanisms of Binding Specificity among bHLH Transcription Factors. Int J Mol Sci, 2021; 22 (17): 9150 DOI: 10.3390/ijms22179150.

2021