Original articles in indexed journals - Computational Science

Khelashvili G, Stanley N, Sahai MA, Medina J, LeVine MV, Shi L, de Fabritiis G, Weinstein H. Spontaneous Inward Opening of the Dopamine Transporter Is Triggered by PIP2-Regulated Dynamics of the N-Terminus. ACS Chem Neurosci, 2015; 6 (11): 1825-1837 . PMID: 26255829 . DOI: 10.1021/acschemneuro.5b00179 NOV 2015.

2015

Original articles in indexed journals - PharmacoInformatics

Capoferri L, Verkade-Vreeker MCA, Buitenhuis D, Commandeur JNM, Pastor M, Vermeulen NPE, Geerke DP. Linear Interaction Energy Based Prediction of Cytochrome P450 1A2 Binding Affinities with Reliability Estimation. PLoS One, 2015; 10 (11): e0142232 . PMID: 26551865 . DOI: 10.1371/journal.pone.0142232.

2015

PhD Thesis - Evolutionary Genomics

Villanueva-Cañas JL. Insights into mammalian adaptive evolution through genomics data. University Pompeu Fabra. Thesis Director: Albà MM. November 20, 2015.

2015

Original articles in indexed journals - Systems Pharmacology

Rubio-Perez C, Tamborero D, Schroeder MP, Antolin AA, Deu-Pons J, Perez-Llamas C, Mestres J, Gonzalez-Perez A, Lopez-Bigas N. In silico prescription of anticancer drugs to cohorts of 28 tumor types reveals novel targeting opportunities. Cancer Res, 2015; 75 (22): 1 DOI: 10.1158/1538-7445.TRANSCAGEN-A1-45.

2015

Original articles in indexed journals - Integrative Biomedical Informatics

Faner R, Gutiérrez-Sacristán A, Castro-Acosta A, Grosdidier S, Gan W, Sánchez-Mayor M, Lopez-Campos JL, Pozo-Rodriguez F, Sanz F, Mannino D, Furlong LI, Agusti A. Molecular and clinical diseasome of comorbidities in exacerbated COPD patients. Eur Respir J, 2015; 46 (4): 1001-1010 . PMID: 26250499 . DOI: 10.1183/13993003.00763-2015.

2015

Original articles in indexed journals - Computational RNA Biology

Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JWS. AtRTD - a comprehensive reference transcript dataset resource foraccurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phitol, 2015; 208 (1): 96-101. PMID: 26111100 . DOI: 10.1111/nph.13545.

2015

Original articles in indexed journals - Evolutionary Genomics

Subirana JA, Albà MM, Messeguer X. High evolutionary turnover of satellite families in Caenorhabditis. BMC Evol Biol, 2015; 15(1):218 . PMID: 26438045 . DOI: 10.1186/s12862-015-0495-x.

2015

Original articles in indexed journals - Structural Bioinformatics

Bonet J, Garcia-Garcia J, Planas-Iglesias J, Fernandez-Fuentes N, Oliva B. Archer: Predicting protein function using local structural features. A helpful tool for protein redesign. Protein Sci, 24 221-221; 1; SI; PI-081

2015

Original articles in indexed journals - Structural Bioinformatics

Marin-Lopez MA, Planas-Iglesias J, Bonet J, Poglayen D, Garcia-Garcia J, Fernandez-Fuentes N, Oliva B. Understanding protein recognition using structural features. Protein Sci, 2015; 24; 245-245; 1; SI; PJ-019

2015

Original articles in indexed journals - Structural Bioinformatics

Martínez-Aranda A, Hernández V, Guney E, Muixí L, Foj R, Baixeras N, Cuadras D, Moreno V, Urruticoechea A, Gil M, Oliva B, Moreno F, González-Suarez E, Vidal N, Andreu X, Seguí MA, Ballester R, Castella E, Sierra A. FN14 and GRP94 expression are prognostic/predictive biomarkers of brain metastasis outcome that open up new therapeutic strategies. Oncotarget, 2015; 6 (42): 44254-44273 . PMID: 26497551 . DOI: doi: 10.18632/oncotarget.5471..

2015