Original articles in indexed journals - Computational RNA Biology

Pérez-Guijarro E, Karras P, Cifdaloz M, Martínez-Herranz R, Cañón E, Graña O, Horcajada-Reales C, Alonso-Curbelo D, Calvo TG, Gómez-López G, Bellora N, Riveiro-Falkenbach E, Ortiz-Romero PL, Rodríguez-Peralto JL, Maestre L, Roncador G, de Agustín Asensio JC, Goding CR, Eyras E, Megías D, Méndez R, Soengas MS. Lineage-specific roles of the cytoplasmic polyadenylation factor CPEB4 in the regulation of melanoma drivers. Nat Commun, 2016; 7: 13418. PMID: 27857118 . DOI: 10.1038/ncomms13418.

2016

Original articles in indexed journals - Computational RNA Biology

Martin S, Bellora N, Gonzalez-Vallinas J, Irimia M, Chebli K, de Toledo M,  Raabe M, Eyras E, Urlaub H, Blencowe B, Tazi J. Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum. J Neurochem, 139 (3): 349-368 . PMID: 27513819 . DOI: 10.1111/jnc.13768 NOV 2016.

2016

PhD Thesis - Integrative Biomedical Informatics

Bravo A. BeFree: a text mining system for the extraction of biomedical information from the literature. Universitat Pompeu Fabra. November, 28th 2016. Thesis Director: Furlong LI.

2016

Original articles in indexed journals - Structural Bioinformatics

Guivernau B, Bonet J, Valls-Comamala V, Bosch-Morato M, Godoy JA, Inestrosa NC, Peralvarez-Marin A, Fernandez-Busquets X, Andreu D, Oliva B, Munoz FJ. Amyloid-beta Peptide Nitrotyrosination Stabilizes Oligomers and Enhances NMDAR-Mediated Toxicity. J Neurosci, 2016; 36 (46): 11693-11703 . PMID: 27852777 . DOI: 10.1523/JNEUROSCI.1081-16.2016 NOV 16 2016.

2016

Other - PharmacoInformatics - Computational Science - GPCR Drug Discovery

Leon Caballero J, Pastor M, De Fabritiis G, Selent J. New molecular insights into the mechanism of lithium action at the dopaminergic D2 receptor. Eur Neuropsychopharmacol, 2016; 26: S239-S239; S2; 1-44

2016

PhD Thesis - Computational RNA Biology

Pages A. Computational tools for the study of RNA processing and function. Universitat Pompeu Fabra. October, 27th 2016. Thesis Directors: Guigó R/Eyras E.

2016

Original articles in indexed journals - Computational RNA Biology

Rodor J, FitzPatrick DR, Eyras E, Cáceres JF. The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development. RNA Biol, 2016; 14 (1): 45-57 . PMID: 27763814 . DOI: 10.1080/15476286.2016.1247148 2017.

2016

Original articles in indexed journals - Computational RNA Biology

García-Martín JA, Bayegan AH, Dotu I, Clote P. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory. BMC Bioinformatics, 2016; 17(1): 424 . PMID: 27756204 .

2016

Reviews in indexed journals - Systems Pharmacology - Computational Science

Ferruz N, Harvey MJ, Mestres J, De Fabritiis G. Insights from Fragment Hit Binding Assays by Molecular Simulations (vol 55, pg 2200, 2015). J Chem Inf Model, 2016; 56 (10):2123-2123 . PMID: 26376295 . DOI: 10.1021/acs.jcim.6b00557 OCT 2016.

2016

Original articles in indexed journals - Structural Bioinformatics

Gubern A, Joaquin M, Marquès M, Maseres P, Garcia-Garcia J, Amat R, González-Nuñez D, Oliva B, Real FX, de Nadal E, Posas F. The N-terminal phosphorylation of RB by p38 bypasses its inactivation by CDKs and prevents proliferation in cancer cells. Molecular Cell, 2016; 64 (1): 25-36 . PMID: 27642049 . DOI: 10.1016/j.molcel.2016.08.015.

2016