PhD Thesis - Computational Biochemistry

Drechsel, Nils Jan Daniel. Development of a multiscale protocol for the study of energetic of protein dynamics. Universitat Pompeu Fabra. October 31st, 2013. Thesis Directors: Villà-Freixa J and Dill K.

2013

Original articles in indexed journals - Computational Biochemistry

Dalton J, Kalid O, Schushan M, Ben-Tal N, Villa-Freixa J. New model of CFTR proposes active channel-like conformation. J Chem Inf Model, 2012. PMID: 22747419 . DOI: 10.1021/ci2005884 |.

2012

Original articles in indexed journals - Computational Biochemistry

Dalton J, Kalid, O, Villa-Freixa J, Ben-Tal N, Lalinde W. New model of CFTR proposes conducting state conformation. Pediatric Pulmonogy, 2011; 34: 227-227

2011

Original articles in indexed journals - Computational Biochemistry

Jana G, Jimenez V, Villa-Freixa J, Prat-Resina X, Delgado E, Alderete JB. A QM/MM study on the last two steps of the catalytic cycle of acetohydroxyacid synthase. Computational and Theoretical Chemistry, 2011;966(1-3):159-166 DOI: 10.1016/j.comptc.2011.02.030.

2011

Original articles in indexed journals - Computational Biochemistry

Avila CL, Drechsel NJ, Alcantara R, Villa-Freixa J. Multiscale Molecular Dynamics of Protein Aggregation. Curr Protein Pept Sci, 2011; 12; 3: 221-234 . PMID: 21348836 .

2011

Original articles in indexed journals - Computational Biochemistry

Maier D, Kalus W, Wolff M, Kalko SG, Roca J, Mas IM, Turan N, Cascante M, Falciani F, Hernández M, Villa-Freixa J, Losko S. Knowledge Management for Systems Biology; a general and visually driven framework applied to translational medicine. BMC Syst Biol, 2011; vol 5; 38. PMID: 21375767 . DOI: 10.1186/1752-0509-5-38.

2011

Original articles in indexed journals - Computational Biochemistry

Lawford PV, Narracott AV, McCormack K, Bisbal J, Martin C,  Bijnens B, Brook B, Zachariou M, Villà–Freixa J, Kohl P, Fletcher K, Diaz-Zuccarini V. Virtual physiological human: training challenges. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. Vol. 369; iss 1935; p 494. 2011 DOI: http://rsta.royalsocietypublishing.org/content/369/1935/494.long.

2011

PhD Thesis - Computational Biochemistry

Lopez A. Computational Approaches to the Modelling of Topological and Dynamical Aspects of Biochemical Networks. Universitat Pompeu Fabra. Director: Villa-Freixa J. October 2010

2010

Original articles in indexed journals - Computational Biochemistry - Computational Science

Cooper J, Cervenansky F, de Fabritiis G, Fenner J, Friboulet D, Giorgino T, Manos S, Martelli Y, Villa-Freixa J, Zasada S, Lloyd S, McCormack K, Coveney PV. The Virtual Physiological Human TOOLKIT. Philos T Roy Soc A, 2010; 368(1925): 3925-3936. PMID: 20643685 . DOI: 10.1098/rsta.2010.0144.

2010

Original articles in indexed journals - Computational Biochemistry

Rue P, Villa-Freixa J, Burrage K. Simulation methods with extended stability for stiff biochemical Kinetics. BMC Syst Biol, 2010; 4: 110. PMID: 20701766 . DOI: 10.1186/1752-0509-4-110.

2010