Original articles in indexed journals - Structural Bioinformatics

Alvarez-Cienfuegos A, Nuñez-Prado N, Compte M, Cuesta AM, Blanco-Toribio A, Harwood SL, Villate M, Merino N, Bonet J, Navarro R, Muñoz-Briones C, Sørensen KM, Mølgaard K, Oliva B, Sanz L, Blanco FJ, Alvarez-Vallina L. Intramolecular trimerization, a novel strategy for making multispecific antibodies with controlled orientation of the antigen binding domains. Sci Rep, 2016; 6: 28643 . PMID: 27345490 . DOI: 10.1038/srep28643.

2016

Original articles in indexed journals - Structural Bioinformatics

Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium, Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S and The HPN-DREAM Consortium (including Anton B, Bonet J, García J, Oliva B, Planas J, Poglayen D. Inferring causal molecular networks: empirical assessment through a community-based effort. Nat Methods, 2016; 13(4): 310-318 . PMID: 26901648 . DOI: 10.1038/nmeth.3773.

2016

Original articles in indexed journals - Structural Bioinformatics

Bonet J, Garcia-Garcia J, Planas-Iglesias J, Fernandez-Fuentes N, Oliva B. Archer: Predicting protein function using local structural features. A helpful tool for protein redesign. Protein Sci, 24 221-221; 1; SI; PI-081

2015

Original articles in indexed journals - Structural Bioinformatics

Marin-Lopez MA, Planas-Iglesias J, Bonet J, Poglayen D, Garcia-Garcia J, Fernandez-Fuentes N, Oliva B. Understanding protein recognition using structural features. Protein Sci, 2015; 24; 245-245; 1; SI; PJ-019

2015

Original articles in indexed journals - Structural Bioinformatics

Martínez-Aranda A, Hernández V, Guney E, Muixí L, Foj R, Baixeras N, Cuadras D, Moreno V, Urruticoechea A, Gil M, Oliva B, Moreno F, González-Suarez E, Vidal N, Andreu X, Seguí MA, Ballester R, Castella E, Sierra A. FN14 and GRP94 expression are prognostic/predictive biomarkers of brain metastasis outcome that open up new therapeutic strategies. Oncotarget, 2015; 6 (42): 44254-44273 . PMID: 26497551 . DOI: doi: 10.18632/oncotarget.5471..

2015

Original articles in indexed journals - Structural Bioinformatics

Resa-Infante P, Paterson D, Bonet J, Otte A, Oliva B, Fodor E, Gabriel G. Targeting importin-alpha 7 as a therapeutic approach against pandemic influenza viruses. J Virol, 2015; 89 (17): 9010-9020 DOI: 10.1128/JVI.00583-15 SEP 2015.

2015

Original articles in indexed journals - Structural Bioinformatics

Oliva B, Fernandez-Fuentes N. Knowledge-based modeling of peptides at protein interfaces: PiPreD. Bioinformatics, 2015; 31 (9): 1405-1410. PMID: 25540186 . DOI: 10.1093/bioinformatics/btu838 MAY 1 2015.

2015

Original articles in indexed journals - Structural Bioinformatics

Segura J, Marín-Lopez MA, Jones PF, Oliva B, Fernandez-Fuentes N. VORFFIP-Driven Dock: V-D2OCK, a Fast and Accurate Protein Docking Strategy. PLoS One, 2015; 10(3):e0118107. . PMID: 25763838 . DOI: doi: 10.1371/journal.pone.0118107. eCollection 2015..

2015

Original articles in indexed journals - Structural Bioinformatics

Martinez-Aranda A, Hernandez V, Guney E, Muixi L, Foj R, Baixeras N, Cuadras D, Moreno V, Urruticoechea A, Gil M, Oliva B, Moreno F, Vidal N, Andreu X, Segui MA, Ballester R, Castella E, Sierra A. FN14 expression in breast cancer is a prognostic and predictive biomarker of brain metastasis outcome that can be targeted with immunomodulators. CLIN EXP METASTAS, 2015; 32 (3):238-239

2015

Original articles in indexed journals - Structural Bioinformatics

Bonet J, Segura J, Planas-Iglesias J, Oliva B, Fernandez-Fuentes N. Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design. Bioinformatics, 2014;30 (13): 1935-1936. PMID: 24603983 . DOI: 10.1093/bioinformatics/btu129 JUL 1 2014.

2014