Original articles in indexed journals - Evolutionary Genomics - Computational RNA Biology

de la Rubia I, Indi JA, Carbonell S, Lagarde J, Alba MM, Eyras E. Reference-free reconstruction and quantification of transcriptomes from long-read sequencing. bioRxiv, 2020 DOI: 10.1101/2020.02.08.939942.

2020

PhD Thesis - Evolutionary Genomics

Blevins W. Evolutionary dynamics of transcriptional and translational regulation in yeast. Universitat Pompeu Fabra. January  17th,  2020. Thesis Directors: Albà MM, Carey L.

2020

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Conserved regions in long non-coding RNAs contain abundant translation and protein-RNA interaction signatures. Nucleic Acids Research Genomics and Bioinformatics, 2019; 1; 1: e2 DOI: 10.1093/nargab/lqz002.

2019

Original articles in indexed journals - Evolutionary Genomics

​Blevins WR, Carey LB, Albà MM. Transcriptomics data of 11 species of yeast identically grown in rich media and oxidative stress conditions. BMC Res Notes​,​ 2019; 12 (1): 250. PMID: 31053168 . DOI: 10.1186/ s13104-019-4286-0.

2019

Original articles in indexed journals - Evolutionary Genomics

Blevins WR, Tavella T, Moro SG, Blasco-Moreno B, Closa-Mosquera A, Díez J, Carey LB, Albà MM. Extensive post-transcriptional buffering of gene expression in the response to oxidative stress in baker's yeast. Sci Rep, 2019; 9: 11005 . PMID: 31358845 . DOI: 10.1101/501478.

2019

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation. Trends Genet, 2018; 35(3): 186-198. PMID: 30606460 . DOI: 10.1016/j.tig.2018.12.003.

2018

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Verdaguer-Grau P, Villanueva-Cañas JL, Messeguer X, Alba MM. Translation of neutrally evolving peptides provides a basis for de novo gene evolution. Nat Ecol Evol, 2018; 2(5): 890-896. PMID: 29556078 . DOI: 10.1038/s41559-018-0506-6.

2018

Original articles in indexed journals - Evolutionary Genomics

Faherty SL, Villanueva-Cañas JL, Blanco MB, Albà MM, Yoder AD. Transcriptomics in the wild: hibernation physiology in free-ranging dwarf lemurs. Mol Ecol, 2018; 27(3): 709-722. PMID: 29319912 . DOI: 10.1111/mec.14483.

2018

Original articles in indexed journals - Evolutionary Genomics

Albà MM. Zinc-finger domains in metazoans: evolution gone wild. Genome Biol, 2017; 18 (1): 168. PMID: 28877710 . DOI: 10.1186/s13059-017-1307-y.

2017

Original articles in indexed journals - Evolutionary Genomics

Villanueva-Cañas JL Ruiz-Orera J, Agea MI, Gallo M, Andreu D, Alba MM. New Genes and Functional Innovation in Mammals. Genome Biol Evol, 2017; 9; 7: 1886–1900. PMID: 28854603 . DOI: 10.1093/gbe/evx136.

2017