Original articles in indexed journals - Computational Genomics - group

Ferreira PG, Jares P, Rico D, Gómez-López G, Martínez-Trillos A, Villamor N, Ecker S, González-Pérez A, Knowles DG, Monlong J, Johnson R, Quesada V, Gouin A, Djebali S, López-Guerra M, Colomer D, Royo C, Cazorla M, Pinyol M, Clot G, Aymerich M, Rozman M, Kulis M, Tamborero D, Papasaikas P, Blanc J, Gut M, Gut I, Puente XS, Pisano DG, Martin-Subero JI, López-Bigas N, López-Guillermo A, Valencia A, López-Otín C, Campo E, Guigo R. Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome Res, 2014; 24 (2): 212-226. PMID: 24265505 . DOI: 10.1101/gr.152132.112.

2014

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Bechara EG, Sebestyen E, Bernardis I, Eyras E, Valcarcel J. RBM5, 6, and 10 Differentially Regulate NUMB Alternative Splicing to Control Cancer Cell Proliferation. Molecular Cell, 2013; 52 (5):720-733. PMID: 24332178 . DOI: 10.1016/j.molcel.2013.11.010 DEC 12 2013.

2013

Original articles in indexed journals - Computational Genomics - group

Gonzalez-Perez A, Perez-Llamas C, Deu-Pons J, Tamborero D, Schroeder MP, Jene-Sanz A, Santos A, Lopez-Bigas N. IntOGen-mutations identifies cancer drivers across tumor types. Nat Methods, 2013; 10 (11): 1081-1082 . PMID: 24037244 . DOI: 10.1038/nmeth.2642.

2013

Original articles in indexed journals - Computational Genomics - group

Ambrus AM, Islam AB, Holmes KB, Moon NS, Lopez-Bigas N, Benevolenskaya EV, Frolov MV. Loss of dE2F Compromises Mitochondrial Function. Dev Cell, 2013; 25; 27(4): 438-51. PMID: 24286825 . DOI: 10.1016/j.devce1.2013.10.002 NOV 25 2013.

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Gonzalez-Perez A, Lopez-Bigas N. OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes. Bioinformatics, 2013; 29 (18): 2238-44 . PMID: 23884480 . DOI: 10.1093/bioinformatics/btt395.

2013

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Heras SR, Macías S, Plass M, Fernández N, Cano D, Eyras E, García-Pérez JL, Cáceres JF. The Microprocessor controls the activity of mammalian retrotransposons. Nat Struct Mol Biol, 2013; 20(10): 1173-81 . PMID: 23995758 . DOI: 10.1038/nsmb.2658.

2013

Original articles in indexed journals - Computational Genomics - group

Cancer Genome Atlas Research Network (including Lopez-Bigas N, González-Pérez A, Tamborero D), Weinstein JN, Collison EA, Mills GB, Shaw KM, Ozenberger BA, Ellrot K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer Analysis Project. Nat Genet, 2013; 45: 1113–1120. PMID: 24071849 . DOI: 10.1038/ng.2764.

2013

Original articles in indexed journals - Computational Genomics - group

Gonzalez-Perez A, Jene-Sanz A, Lopez-Bigas N. The mutational landscape of chromatin regulatory factors across 4623 tumor samples. Genome Biol, 2013; 14(9):r106 . PMID: 24063517 . DOI: 10.1186/gb-2013-14-9-r106.

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Gonzalez-Perez A, Perez-Llamas C, Deu-Pons J, Kandoth C, Reimand J, Lawrence MS, Getz G, Bader GD, Ding L, Lopez-Bigas N. Comprehensive identification of mutational cancer driver genes across 12 tumor types. Sci Rep, 2013; 3 . PMID: 24084849 . DOI: 10.1038/srep02650.

2013

PhD Thesis - Computational RNA Biology - Computational Genomics - group

González-Vallinas JR. Software development and analysis of High Throughput Sequencing data for genomic enhancer prediction. Universitat Pompeu Fabra. September 9th. 2013. Thesis Director: López-Bigas, N and Eyras E.

2013