Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Alló M, Buggiano V, Fededa JP, Petrillo E, Schor I, de la Mata M, Agirre E, Plass M, Eyras E, Elela SA, Klinck R, Chabot B, Kornblihtt AR. Control of alternative splicing through siRNA-mediated transcriptional gene silencing. Nat Struct Mol Biol, 2009; 16(7):717-24.. PMID: 19543290 . DOI: 10.1038/nsmb.1620.

2009

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Elsik CG, Tellam RL, Worley KC, Bovine Genome Sequencing Anal C. The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution. Science. 2009 Apr;324(5926): 522-8. PMID: 19390049 . DOI: 10.1126.

2009

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boué S, Eyras E, Plass M, Lopez F, Ritchie W, Moucadel V, Ara T, Pospisil H, Herrmann A, G Reich J, Guigó R, Bork P, Doeberitz MK, Vilo J, Hide W, Apweiler R, Thanaraj TA, Gautheret D. ASTD: The Alternative Splicing and Transcript Diversity database. Genomics, 2009; 93 (3): 213-20. PMID: 19059335 . DOI: 10.1016/j.ygeno.2008.11.003.

2009

Original articles in indexed journals - Computational RNA Biology

Schwartz SH, Silva J, Burstein D, Pupko T, Eyras E, Ast G. Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes. Genome Res. 2008 Jan; 18(1):88-103.. PMID: 18032728 . DOI: 10.1101/gr.6818908.

2008

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Corvelo A, Eyras E. Exon creation and establishment in human genes. Genome Biol. 2008 Sep 23; 9(9):R141.. 18811936. DOI: 10.1186/gb-2008-9-9-r141.

2008

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Plass M, Agirre E, Reyes D, Camara F, Eyras E. Co-evolution of the branch site and SR proteins in eukaryotes. Trends Genet. 2008 Dec; 24(12):590-4.. PMID: 18992956 . DOI: 10.1016/j.tig.2008.10.004.

2008

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007 Jun;447(7146):799-816 . PMID: 17571346 . DOI: 10.1038/nature05874.

2007

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Lyle R, Prandini P, Osoegawa K, Hallers B, Humphray S, Zhu B, Eyras E, Castelo R, Bird CP, Cagos S, Scott C, Cox A, Deutsch S, Ucla C, Cruts M, Dahoun S, She X, Bena F, Wang SY, Van Broeckhoven C, Eichler EE, Guigó R, Rogers J, de Jong PJ, Reymond A, Antonarakis SE. Islands of euchromatin-like sequence and expresse d polymorphic sequences within the short arm of human chromosome 21, Genome Res. 2007; 17:1690-96. PMID: 17895424 . DOI: 10.1101/gr.6675307.

2007

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis S, Reese MG. EGASP: The human encode genome annotation assessment project. Genome Biol 2006; 7 Supl 1: S2

2006

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Plass M, Eyras E. Differentiated evolutionary rates in alternative exons and the implications for splicing regulation. BMC Evol Biol. 2006; 22(6):50

2006