Original articles in indexed journals - Computational RNA Biology

Sebestyen E, Singh B, Miñana B, Pages A, Mateo F, Pujana MA, Valcarcel J, Eyras E. Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks. Genome Research, 2016; 26 (6): 732-744 . PMID: 27197215 . DOI: 10.1101/ gr. 199935. 115.

2016

Original articles in indexed journals - Computational RNA Biology

Falaleeva M, Pages A, Matuszek Z, Hidmi S, Agranat-Tamir L, Korotkov K, Nevo Y, Eyras E, Sperling R, Stamm S. Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. Proc Natl Acad Sci U S A, 2016; 113 (12):E1625-E1634 . PMID: 26957605 . DOI: 10.1073/pnas.1519292113 MAR 22 2016.

2016

Original articles in indexed journals - Computational RNA Biology

Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JWS. AtRTD - a comprehensive reference transcript dataset resource foraccurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phitol, 2015; 208 (1): 96-101. PMID: 26111100 . DOI: 10.1111/nph.13545.

2015

Original articles in indexed journals - Computational RNA Biology

Kremsky I, Bellora N, Eyras E. A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing. PLoS One, 2015; 10(7): e0132448. PMID: 26207626 . DOI: 10.1371/journal.pone.0132448. eCollection 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Gonzalez-Vallinas J, Pages A, Singh B, Eyras E. A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells. BMC Genomics, 2015; 16. PMID: 26169177 . DOI: 10.1186/s12864-015-1704-0.

2015

Original articles in indexed journals - Computational RNA Biology

Alamancos GP, Pagès A, Trincado JL, Bellora N, Eyras E. Leveraging transcript quantification for fast computation of alternative splicing profiles. RNA, 2015; 21 (9): 1521-1531
. PMID: 26179515 . DOI: 10.1261/rna.051557.115 SEP 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Genova AD, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A. The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Res, 2015; 43 (W1): W589-W598. PMID: 25897122 . DOI: 10.1093/nar/gkv350 JUL 1 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Sebestyen E, Zawisza M, Eyras E. Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer. Nucleic Acids Research, 2015; 43 (3): 1345-1356. PMID: 25578962 . DOI: 10.1093 / NAR / gku1392..

2015

Original articles in indexed journals - Computational RNA Biology

Coelho MB, Attig J, Bellora N, König J, Hallegger M, Kayikci M, Eyras E, Ule J, Smith CW. Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB. EMBO JOURNAL, 34 (5): 653-668. PMID: 25599992 .

2015

Original articles in indexed journals - Computational RNA Biology

Agirre E, Bellora N, Allo M, Pages A, Bertucci P, Kornblihtt AR, Eyras E. A chromatin code for alternative splicing involving a putative association between CTCF and HP1 alpha proteins. BMC Biology, 2015; 13. PMID: . DOI: 10.1186/s12915-015-0141-5 MAY 2 2015.

2015