Original articles in indexed journals - Computational RNA Biology

Bueno C, Velasco-Hernandez T, Gutiérrez-Agüera F, Zanetti SR, Baroni ML, Sánchez-Martínez D, Molina O, Closa A, Agraz-Doblás A, Marín P, Eyras E, Varela I, Menéndez P. CD133-directed CAR T-cells for MLL leukemia: on-target, off-tumor myeloablative toxicity. Leukemia, 2019; 33, 2090-2125. PMID: 30778134 . DOI: 10.1038/s41375-019-0418-8.

2019

Original articles in indexed journals - Computational RNA Biology

Singh B, Trincado JL, Tatlow PJ, Piccolo SR, Eyras E. Genome Sequencing and RNA-motif Analysis Reveal Novel Damaging Non-coding Mutations in Human Tumors. Mol Cancer Res, 2018; 16(7): 1112-1124. PMID: 29592900 . DOI: 10.1158/1541-7786.MCR-17-0601.

2018

Original articles in indexed journals - Computational RNA Biology

Jayasinghe RG, Cao S, Gao Q, Wyczalkowski MA, Sengupta S, Walter MJ and the Splicing Analysis Working Group (including Eyras E). Comprehensive portrait of canonical and non-canonical splicing in cancer. Cancer Research, 2018; 78 (13 Supplement): 2362. DOI: 10.1158/1538-7445.AM2018-2362.

2018

Original articles in indexed journals - Computational RNA Biology

Jayasinghe RG, Cao S, Gao O, Wendl MC, Vo NS, Reynolds SM, Zhao Y, Climente-González H, Chai S, Wang F, Varghese R, Huang M, Liang WW, Wyczalkowski MA, Sengupta S, Li Z, Payne SH, Fenyö D, Miner JH, Walter MJ. The Cancer Genome Atlas Research Network, Vincent B, Eyras E, Chen K, Shmulevich I, Chen F, Ding L. Systematic Analysis of Splice-Site-Creating Mutations in Cancer. Cell Rep, 2018; 23(1): 270-281.e3. PMID: 29617666 . DOI: 10.1016/j.celrep.2018.03.052.

2018

Original articles in indexed journals - Computational RNA Biology

Dotu I, Adamson SI, Coleman B, Fournier C, Ricart-Altimiras E, Eyras E, Chuang JH. SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data. PLoS Comput Biol, 2018; 14(3): e1006078. PMID: 29596423 . DOI: 10.1371/journal.pcbi.1006078.

2018

Original articles in indexed journals - Computational RNA Biology

Trincado JL, Entizne JC, Hysenaj G, Singh B, Skalic M, Elliott DJ, Eyras E. SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions. Genome Biol, 2018; 19(1): 40. PMID: 29571299 . DOI: 10.1186/s13059-018-1417-1.

2018

Original articles in indexed journals - Computational RNA Biology

Pagès A, Dotu I, Pallarès-Albanell J, Martí E, Guigó R, Eyras E. The discovery potential of RNA processing profiles. Nucleic Acids Res, 2018;  16; 46(3): e15. PMID: 29155959 . DOI: 10.1093/nar/gkx1115.

2018

Original articles in indexed journals - Computational RNA Biology

Closa A, Bowden M, Orsola A, Lloreta J, Juanpere N, Zhou CW, Bellmunt J, Eyras E. Differential expression of SRSF2 contribute to the splicing changes related to micropapillary variant histology in nonmuscle-invasive bladder cancer (NMIBC). Journal of Clinical Oncology, 2018 ;36 (15_suppl), e16520-e16520 DOI: 10.1200/JCO.2018.36.15_suppl.e16520.

2018

Original articles in indexed journals - Computational RNA Biology

Cifdaloz M, Osterloh L, Graña O, Riveiro-Falkenbach E, Ximénez-Embún P, Muñoz J, Tejedo C, Calvo TG, Karras P, Olmeda D, Miñana B, Gómez-López G, Cañon E, Eyras E, Guo H, Kappes F, Ortiz-Romero PL, Rodríguez-Peralto JL, Megías D, Valcárcel J, Soengas MS. Systems analysis identifies melanoma-enriched pro-oncogenic networks controlled by the RNA binding protein CELF1. Nat Commun, 2017; 8(1): 2249.. PMID: 29269732 . DOI: 10.1038/s41467-017-02353-y.

2017

Original articles in indexed journals - Computational RNA Biology

Climente-González H, Porta-Pardo E, Godzik A, Eyras E. The Functional Impact of Alternative Splicing in Cancer. Cell Rep, 2017; 20 (9): 2215-2226. PMID: 28854369 . DOI: 10.1016/j.celrep.2017.08.012.

2017