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Results 1 - 10 of about 79
Original articles in indexed journals - Computational RNA Biology
Reixachs-Solé M, Eyras E. Uncovering the impacts of alternative splicing on the proteome with current omics techniques. Wiley Interdiscip Rev RNA, 2022; 3: e1707. PMID: 34979593 . DOI: 10.1002/wrna.1707.
2022
Original articles in indexed journals - Computational RNA Biology
Bournazos et al (including Eyras E). Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants. Genetics in Medicine, 2022; 24: 130-145
2022
Original articles in indexed journals - Computational RNA Biology
Ruiz de Garibay G, Fernandez-Garcia I, Mazoyer S, Leme de Calais F, Ameri P, Vijayakumar S, Martinez-Ruiz H, Damiola F, Barjhoux L, Thomassen M, Andersen LVB, Herranz C, Mateo F, Palomero L, Espín R, Gómez A, García N, Jimenez D, Bonifaci N, Extremera AI, Castaño J, Raya A, Eyras E, Puente XS, Brunet J, Lázaro C; GEMO; CIMBA, Radice P, Barnes DR, Antoniou AC, Spurdle AB, de la Hoya M, Baralle D, Barcellos-Hoff MH, Pujana MA. Altered regulation of BRCA1 exon 11 splicing is associated with breast cancer risk in carriers of BRCA1 pathogenic variants. Hum Mutat, 2021; 42(11): 1488-1502. PMID: 34420246 . DOI: 10.1002/humu.24276.
2021
Original articles in indexed journals - Integrative Biomedical Informatics - Computational RNA Biology
Trincado JL, Reixachs-Solé M, Perez-Granado J, Fugmann T, Sanz F, Yokota J, Eyras E. ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer. PLOS Comput Biol, 2021; 17(9): e1009411 DOI: 10.1371/journal.pcbi.1009411.
2021
Original articles in indexed journals - Computational RNA Biology
Yuen ZW, Srivastava A, Daniel R, McNevin D, Jack C, Eyras E. Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing. Nat Commun, 2021; 12(1):3438. PMID: 34103501 . DOI: 10.1038/s41467-021-23778-6.
2021
Original articles in indexed journals - Computational RNA Biology
Acera Mateos P, Balboa RF, Easteal S, Eyras E*, Patel HR*. PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA virs. Sci Rep, 2021; 11(1):3209. PMID: 33547380 . DOI: 10.1038/s41598-021-82043-4.
2021
Original articles in indexed journals - Computational RNA Biology
Pascual R, Segura-Morales C, Omerzu M, Bellora N, Belloc E, Castellazzi CL, Reina O, Eyras E, Maurice MM, Millanes-Romero A, Méndez R. mRNA spindle localization and mitotic translational regulation by CPEB1 and CPEB4. RNA, 2020; 27(3):291-302. PMID: 33323527 . DOI: 10.1261/rna.077552.120.
2020
Original articles in indexed journals - Evolutionary Genomics - Computational RNA Biology
Reixachs-Solé M, Ruiz-Orera J, Albà MM, Eyras E. Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome. Nat Commun, 2020; 11(1): 1768. PMID: 32286305 . DOI: 10.1038/s41467-020-15634-w.
2020
Original articles in indexed journals - Evolutionary Genomics - Computational RNA Biology
de la Rubia I, Indi JA, Carbonell S, Lagarde J, Alba MM, Eyras E. Reference-free reconstruction and quantification of transcriptomes from long-read sequencing. bioRxiv, 2020 DOI: 10.1101/2020.02.08.939942.
2020
Original articles in indexed journals - Computational RNA Biology
Ruiz-Reche A, Srivastava A, Indi JA, de la Rubia I, Eyras E. ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning. Genome Biol, 2019; 20(1): 260. PMID: 31783882 . DOI: 10.1186/s13059-019-1884-z.
2019
