Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007 Jun;447(7146):799-816 . PMID: 17571346 . DOI: 10.1038/nature05874.

2007

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Lyle R, Prandini P, Osoegawa K, Hallers B, Humphray S, Zhu B, Eyras E, Castelo R, Bird CP, Cagos S, Scott C, Cox A, Deutsch S, Ucla C, Cruts M, Dahoun S, She X, Bena F, Wang SY, Van Broeckhoven C, Eichler EE, Guigó R, Rogers J, de Jong PJ, Reymond A, Antonarakis SE. Islands of euchromatin-like sequence and expresse d polymorphic sequences within the short arm of human chromosome 21, Genome Res. 2007; 17:1690-96. PMID: 17895424 . DOI: 10.1101/gr.6675307.

2007

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis S, Reese MG. EGASP: The human encode genome annotation assessment project. Genome Biol 2006; 7 Supl 1: S2

2006

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Plass M, Eyras E. Differentiated evolutionary rates in alternative exons and the implications for splicing regulation. BMC Evol Biol. 2006; 22(6):50

2006

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Castelo R, Reymond A, Wyss C, Câmara F, Parra G, Antonarakis SE, Guigó R, Eyras E. Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely-expressed human genes. Nucleic Acids Res 2005; 33(6): 1935-9.. 15809229. DOI: 10.1093/nar/gki328.

2005

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Eyras E, Reymond A, Castelo R, Bye JM, Camara F, Flicek P et al. Gene finding in the chicken genome. BMC Bioinformatics 2005; 6 (1) : 131-42.. 15924626. DOI: 10.1186/1471-2105-6-131.

2005

Original articles in indexed journals - Computational RNA Biology

Eyras E, Caccamo M, Curwen V, Clamp M. ESTGenes: alternative splicing from EST in Ensembl. Genome Res. 2004; 14(5):976-87. 15123595. DOI: 10.1101/gr.1862204.

2004

Original articles in indexed journals - Computational RNA Biology

Curwen V, Eyras E, Andrews TD, Clarke L, Mongin E, Searle SM, Clamp M. The Ensembl automatic gene annotation system. Genome Res. 2004: 14(5):942-50.. 15123590. DOI: 10.1101/gr.1858004.

2004

Original articles in indexed journals - Evolutionary Genomics - Computational RNA Biology - Computational Genomics - group

Rat Genome Sequencing Project Consortium (including Camara F, Alba MM, Abril JF, Eyras E, Guigo R). Genome Sequence of the brown Norway rat yields insights into mammalian evolution. Nature, 2004; 428 (6982): 493-521. DOI: 15057822.

2004

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Wahl MB, Caldwell RB, Kierzek AM, Arakawa H, Eyras E, Hubner N, Jung C, Soeldenwagner M, Cervelli M, Wang Y-D, Liebscher V and Buerstedde J-M. Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line. BMC Genomics 2004; 5: 98.. 15610564.

2004