Original articles in indexed journals - Integrative Biomedical Informatics

Gutiérrez-Sacristán A, Guedj R, Korodi G, Stedman J, Furlong LI, Patel CJ, Kohane IS, Avillach P. Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Bioinformatics, 2017 . PMID: 29267850 . DOI: 10.1093/bioinformatics/btx788.

2017

Original articles in indexed journals - Integrative Biomedical Informatics - Systems Pharmacology - PharmacoInformatics

Sanz F, Pognan F, Steger-Hartmann T, Díaz C, Cases M, Pastor M, Marc P, Wichard J, Briggs K, Watson D, Kleinöder T, Yang C, Amberg A, Beaumont M, Brookes A, Brunak S, Cronin MTD, Ecker GF, Escher S, Greene N, Guzmán A, Hersey A, Jacques P, Lammens L, Mestres J, Muster W, Northeved H, Pinches M, Saiz J, Sajot N, Valencia A, van der Lei J, Vermeulen NPE, Vock E, Wolber G, Zamora I. Legacy data sharing to improve drug safety assessment: the eTOX project. Nature Reviews Drug Discovery, 2017; 16(12): 811-812. PMID: 29026211 . DOI: 10.1038/nrd.2017.177.

2017

Original articles in indexed journals - Integrative Biomedical Informatics

Gutiérrez-Sacristán A, Hernández-Ferrer C, González JR, Furlong LI. Psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes. Bioinformatics, 2017 . PMID: 28961763 . DOI: 10.1093/bioinformatics/btx506.

2017

Original articles in indexed journals - Integrative Biomedical Informatics

Leist M, Ghallab A, Graepel R, Marchan R, Hassan R, Bennekou SH, Limonciel A, Vinken M, Schildknecht S, Waldmann T, Danen E, van Ravenzwaay B, Kamp H, Gardner I, Godoy P, Bois FY, Braeuning A, Reif R, Oesch F, Drasdo D, Höhme S, Schwarz M, Hartung T, Braunbeck T, Beltman J, Vrieling H, Sanz F, Forsby A, Gadaleta D, Fisher C, Kelm J, Fluri D, Ecker G, Zdrazil B, Terron A, Jennings P, van der Burg B, Dooley S, Meijer AH, Willighagen E, Martens M, Evelo C, Mombelli E, Taboureau O, Mantovani A, Hardy B, Koch B, Escher S, van Thriel C, Cadenas C, Kroese D, van de Water B, Hengstler JG. Adverse outcome pathways: opportunities, limitations and open questions. Arch Toxicol, 2017; 91(11): 3477-3505 . PMID: 29051992 . DOI: 10.1007/s00204-017-2045-3.

2017

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

Lopez O, Sanz F, Pastor M. An automated tool for obtaining QSAR-ready series of compounds using semantic web technologies. Bioinformatics, 2017; 34(1): 131-133 . PMID: 28968713 . DOI: 10.1093/bioinformatics/btx566.

2017

Original articles in indexed journals - Integrative Biomedical Informatics - Structural Bioinformatics

Rubio-Pérez C, Guney E, Aguilar D, Piñero J, García-García J, Iadarola B, Sanz F, Fernandez-Fuentes N, Furlong LI, Oliva B. Genetic and functional characterization of disease associations explains comorbidity. Sci Rep, 2017; 7 (1): 6207 . PMID: 28740175 . DOI: 10.1038/s41598-017-04939-4.

2017

Book chapters - Integrative Biomedical Informatics

Sanz F. Data Integration and Sharing Supporting Drug R&D. In: Samuel Chackalamannil, David P Rotella and Simon E Ward, (eds.) Comprehensive Medicinal Chemistry III vol. 1, pp. 436-443. Oxford: Elsevier.  DOI: 10.1016/ B978-0-12-409547-2. 12297-8.

2017

Original articles in indexed journals - Integrative Biomedical Informatics

Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Four simple recommendations to encourage best practices in research software. F1000Res, 2017; 6: ELIXIR-876. PMID: 28751965 . DOI: 10.12688/f1000research.11407.1.

2017

Original articles in indexed journals - Integrative Biomedical Informatics

Matos ML, Lapyckyj L, Rosso M, Besso MJ, Mencucci MV, Briggiler CI, Giustina S, Furlong LI, Vazquez-Levin MH. Identification of a Novel Human E-Cadherin Splice Variant and Assessment of Its Effects Upon EMT-Related Events. J Cell Physiol, 2017; 232 (6): 1368-1386. . PMID: 27682981 . DOI: 10.1002/jcp.25622. Epub 2016 Dec 29..

2017

Original articles in indexed journals - Integrative Biomedical Informatics

Gomez-Rubio P, Rosato V, Marquez M, Bosetti C, Molina-Montes E, Rava M, Piñero J, Michalski CW, Farré A, Molero X, Löhr M, Ilzarbe L, Perea J, Greenhalf W, O'Rorke M, Tardón A, Gress T, Barberà VM, Crnogorac-Jurcevic T, Muñoz-Bellvís L, Domínguez-Muñoz E, Gutiérrez-Sacristán A, Balsells J, Costello E, Guillén-Ponce C, Huang J, Iglesias M, Kleeff J, Kong B, Mora J, Murray L, O'Driscoll D, Peláez P, Poves I, Lawlor RT, Carrato A, Hidalgo M, Scarpa A, Sharp L, Furlong LI, Real FX, La Vecchia C, Malats N, PanGenEU Study Investigators. A systems approach identifies time-dependent associations of multimorbidities with pancreatic cancer risk. Ann Oncol, 2017 . PMID: 28383714 .

2017