Original articles in indexed journals - Computational Science

Perez-Hernandez G, Paul F, Giorgino T, De Fabritiis G, Noé F. Identification of slow molecular order parameters for Markov model construction. J Chem Phys, 2013; 139(1):015102. PMID: 23822324 . DOI: 10.1063/1.4811489.

2013

Original articles in indexed journals - Computational Science

Venken T, Voet A, De Maeyer M, De Fabritiis G, Sadiq SK. Rapid Conformational Fluctuations of Disordered HIV-1 Fusion Peptide in Solution. J Chem Theory Comput, 2013; 9; 7: 2870-2874. PMID: . DOI: 10.1021/ct300856r.

2013

Original articles in indexed journals - Structural Bioinformatics

Garriga D, Ferrer-Orta C, Querol-Audi J, Oliva B, Verdaguer N. Role of Motif B Loop in Allosteric Regulation of RNA-Dependent RNA Polymerization Activity. J Mol Biol, 2013; 425 (13):2279-2287 . PMID: 23542342 . DOI: 10.1016/j.jmb.2013.03.034.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Bornberg-Bauer E, Alba MM. Dynamics and adaptive benefits of modular protein evolution. Curr Opin Struct Biol, 2013;  23 (3): 459-466. PMID: 23562500 . DOI: 10.1016/j.sbi.2013.02.012.

2013

Original articles in indexed journals - Integrative Biomedical Informatics - Systems Pharmacology

Oliveira JL, Lopes P, Nunes T, Campos D, Boyer S, Ahlberg E, van Mulligen EM, Kors JA, Singh B, Furlong LI, Sanz F, Bauer-Mehren A, Carrascosa MC, Mestres J, Avillach P, Diallo G, Díaz Acedo C, van der Lei J. The EU-ADR Web Platform: delivering advanced pharmacovigilance tools. Pharmacoepidemiol Drug Saf, 2013; 22 (5): 459-467. PMID: 23208789 . DOI: 10.1002/pds.3375.

2013

Original articles in indexed journals - Structural Bioinformatics

Martínez-Høyer S, Aranguren-Ibáñez A, García-García J, Serrano-Candelas E, Vilardell J, Nunes V, Aguado F, Oliva B, Itarte E, Pérez-Riba M. Protein kinase CK2-dependent phosphorylation of the human Regulators of Calcineurin reveals a novel mechanism regulating the calcineurin-NFATc signaling pathway. Biochim Biophys Acta, 2013; 1833 (10):2311-2321 . PMID: 23732701 . DOI: 10.1016/j.bbamcr.2013.05.021.

2013

Original articles in indexed journals - Systems Pharmacology - PharmacoInformatics

Azzaoui K, Jacoby E, Senger S, Rodríguez EC, Loza M, Zdrazil B, Pinto M, Williams AJ, de la Torre V, Mestres J, Pastor M, Taboureau O, Rarey M, Chichester C, Petiffer S, Blomberg N, Harland L, Williams-Jones B, Ecker GF. Scientific competency questions as the basis for semantically enriched open pharmacological space development. Drug Discov Today, 2013; 18: 843-852 . PMID: 23702085 . DOI: 10.1016/j.drudis.2013.05.008 SEP 2013.

2013

Original articles in indexed journals - Computational Genomics - group

Barneda-Zahonero B. Roman-Gonzalez L, Collazo O, Rafati H, Islam AMMK, Bussmann LH, di Tullio A, De Andres L, Graf T, Lopez-Bigas N, Mahmoudi T, Parra M. HDAC7 Is a Repressor of Myeloid Genes Whose Downregulation Is Required for Transdifferentiation of Pre-B Cells into Macrophages. Plos Genetics, 9 (5):e1003503. PMID: 23696748 . DOI: 10.1371/journal.pgen.1003503.

2013

Original articles in indexed journals - NeuroGenomics

Prado-Martínez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdós B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernández-Rodríguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernández-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Melé M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilson C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE*, Marquès-Bonet T*. Great ape genetic diversity and population history. Nature, 2013; 499(7459): 471-475. PMID: 23823723 . DOI: 10.1038/nature12228.

2013

Original articles in indexed journals - Structural Bioinformatics

Planas-Iglesias J, Bonet J, García-García J, Marín-López MA, Feliu E, Oliva B. Understanding protein-protein interactions using local structural features. J Mol Biol, 2013; 425 (7):1210-1224. PMID: 23353828 . DOI: 10.1016/j.jmb.2013.01.014.

2013