Original articles in indexed journals - Computational RNA Biology

Jayasinghe RG, Cao S, Gao O, Wendl MC, Vo NS, Reynolds SM, Zhao Y, Climente-González H, Chai S, Wang F, Varghese R, Huang M, Liang WW, Wyczalkowski MA, Sengupta S, Li Z, Payne SH, Fenyö D, Miner JH, Walter MJ. The Cancer Genome Atlas Research Network, Vincent B, Eyras E, Chen K, Shmulevich I, Chen F, Ding L. Systematic Analysis of Splice-Site-Creating Mutations in Cancer. Cell Rep, 2018; 23(1): 270-281.e3. PMID: 29617666 . DOI: 10.1016/j.celrep.2018.03.052.

2018

PhD Thesis - Integrative Biomedical Informatics - GPCR Drug Discovery

Rodríguez Espigares I. GPCRmd - A web platform for collection, visualization and analysis of molecular dynamics data for G protein-coupled receptors. Universitat Pompeu Fabra.  April 4th, 2018. Thesis Directors: Sanz F and Selent J.

2018

Original articles in indexed journals - Functional Genomics

Puigdevall P, Castelo R. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor. Bioinformatics, 2018; bty311. PMID: 29718111 . DOI: 10.1093/bioinformatics/bty311.

2018

Original articles in indexed journals - Integrative Biomedical Informatics

Gutiérrez-Sacristán A, Bravo A, Giannoula A, Mayer MA, Sanz F, Furlong LI. comoRbidity: An R package for the systematic analysis of disease comorbidities. Bioinformatics, 2018; 34 (18): 3228-30. PMID: 29897411 . DOI: 10.1093/ bioinformatics/ bty315.

2018

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

López-Massaguer O, Pinto-Gil K, Sanz F, Amberg A, Anger LT, Stolte M, Ravagli C, Marc P, Pastor M. Generating modelling data from repeat-dose toxicity reports. Toxicol Sci, 2018; 162(1): 287-300. PMID: 29155963 . DOI: 10.1093/toxsci/kfx254.

2018

Original articles in indexed journals - Integrative Biomedical Informatics

Giannoula A, Gutierrez Sacristán A, Bravo A, Sanz F, Furlong LI. Identifying temporal patterns in patient disease trajectories using dynamic time warping: A population-based study. Sci Rep, 2018; 8(1): 4216. PMID: 29523868 . DOI: 10.1038/s41598-018-22578-1.

2018

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

Romero L, Cano J, Gomis-Tena J, Trenor B, Sanz F, Pastor M, Saiz J. In Silico QT and APD Prolongation Assay for Early Screening of Drug-Induced Proarrhythmic Risk. J Chem Inf Model, 2018; 58(4): 867-878. PMID: 29547274 . DOI: 10.1021/acs.jcim.7b00440.

2018

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Verdaguer-Grau P, Villanueva-Cañas JL, Messeguer X, Alba MM. Translation of neutrally evolving peptides provides a basis for de novo gene evolution. Nat Ecol Evol, 2018; 2(5): 890-896. PMID: 29556078 . DOI: 10.1038/s41559-018-0506-6.

2018

PhD Thesis - Systems Pharmacology

​Carrascosa MC. Next generation of informatics tools for big data analytics in drug discovery. Universitat Pompeu Fabra. March, 20th 2018. Thesis Director: Mestres J.

2018

Original articles in indexed journals - Computational RNA Biology

Dotu I, Adamson SI, Coleman B, Fournier C, Ricart-Altimiras E, Eyras E, Chuang JH. SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data. PLoS Comput Biol, 2018; 14(3): e1006078. PMID: 29596423 . DOI: 10.1371/journal.pcbi.1006078.

2018