6/6/2016

A new energy source within the cells

This work counted with the participation of Baldo Oliva, head of the Structural Bioinformatics group of GRIB (UPF-IMIM) and Jaume Bonet, postdoctoral researcher of the same group who recently joined the Ecole Polytechnique Fédérale de Lausanne (Switzerland) that designed the structural model Nudix5 necessary to carry out the research described.

All our cells require the small molecule ATP, generated in the mitochondria to cover the energy required for cell metabolism, dynamics and growth. To a lower extent and particularly in cancer cells, ATP can also be generated in the cytoplasm from the energy gained during degradation of glucose. These sources of ATP are sufficient to cover the energetic needs of cells in normal conditions. However, in response to stress-­inducing external signals or to extensive DNA damage, the cells need to globally reprogram their gene expression pattern, a process that requires extensive remodeling of chromatin to gain access to the regulatory information encoded in DNA.

The DNA in the cell nucleus is packaged into chromatin in a form that prevents access o genetic information. Global reprogramming of gene expression to deal with stressful situations and high levels of DNA damage requires loosening the interaction of DNA with chromatin proteins. The modification of chromatin proteins consumes large amounts of energy. To cover these special needs, the cells require an extra amount of energy so, a new pathway is activated in order to get more ATP available.

In a paper published on 3rd June in Science, researchers at the Centre for Genomic Regulation (CRG) led by senior group leader Miguel Beato in collaboration with the Pompeu Fabra University, the Institute for Research in Biomedicine (IRB) in Barcelona, and the University Rovira i Virgili (URV) in Tarragona have described for the first time a new pathway generating energy within the cell nucleus for remodeling chromatin and reprogramming gene expression. They have also identified the function of enzymes involved at every step of this process and how they are activated in response to stress signals. Their results, will help in understanding the mechanisms underlying chromatin remodelling, its relationship with DNA damage and, by extension, with cancer. 

" Exceptional situations call for extraordinary measures. When cells need to cope with a global reprogramming of gene expression they require a lot of energy in the nucleus. In these situations the cells block their mitochondrial and cytosolic ATP production to be focused on the main task in the nucleus," says Miguel Beato, group leader at the CRG and principal investigator of this paper.

Researchers found that poly-ADP-ribose (PAR), one of the main actors in chromatin decompaction and DNA damage repair is the cornerstone for the nuclear ATP synthesis. Its building blocks of ADP-ribose are used by the nuclear enzyme NUDIX5 to generate ATP. Blocking NUDIX5 activity precludes chromatin remodeling, reprogramming of gene expression and the cell adaptation to stress or DNA damage.

" Our results point to NUDIX5 as key player in nuclear ATP synthesis for chromatin remodeling. Since NUDIX5 is overexpressed in various types of cancer, this fundamental finding could contribute to targeted cancer medicine. NUDIX5 could be a biomarker for cancer stratification and a new potential target for future cancer treatment," concludes Roni Wright, first author of the paper and CRG postdoctoral researcher.

Article reference: Wright R, Lioutas A, Le Dily F, Soronellas D, Pohl A, Bonet J, Nacht AS, Samino S, Puchades Carrasco L, Font-Mateu J, Vicent GP, Wierer M, Trabado MA, Schelhorn C, Carolis C, Macias MJ, Yanes O, Oliva B, Beato M. ADP-ribose-derived nuclear ATP synthesis by NUDIX5 is required for chromatin remodeling. Science, 352 (6290), 1221-1225. doi: 10.1126/ science. aad9335